#NovelVirus     #Zoonotic     #Sequence-based

Last update 27 April 2018

 

1: de Oliveira Carneiro I, Sander AL, Silva N, Moreira-Soto A, Normann A, Flehmig B, Lukashev AN, Dotzauer A, Wieseke N, Franke CR, Drexler JF. A novel marsupial hepatitis A virus corroborates complex evolutionary patterns shaping the genus Hepatovirus. J Virol. 2018 Apr 25. pii: JVI.00082-18. doi: 10.1128/JVI.00082-18. [Epub ahead of print] PubMed PMID: 29695421.

2: Zhu A, Jiang T, Hu T, Mi S, Zhao Z, Zhang F, Feng J, Fan Q, He B, Tu C. Molecular characterization of a novel bat-associated circovirus with a poly-T tract in the 3' intergenic region. Virus Res. 2018 Apr 21. pii: S0168-1702(18)30152-7. doi: 10.1016/j.virusres.2018.04.012. [Epub ahead of print] PubMed PMID: 29689280.

3: Bwogi J, Jere KC, Karamagi C, Byarugaba DK, Namuwulya P, Desselberger U, Iturriza-Gomara M. A47 Whole-genome analysis of rotaviruses isolated from humans and domestic animals in Uganda, 2012–2014 reveals possible anthroponosis and multiple rotavirus reasortment events between species. Virus Evol. 2018 Apr; 4(Suppl 1):  vey010.046.  Published online 2018 Apr 17. doi: 10.1093/ve/vey010.046. PMCID: PMC5905509.

4: Souza WM, Acrani GO, Carrasco A, Fumagalli MJ, Romeiro MF, Modha S, Hughes J, Nunes MRT, Murcia PR, Figueiredo LTM. A58 Identification of novel viruses in the families Flaviviridae (Jigmenvirus), Chuviridae, and Bunyaviridae  (phlebovirus-like) in ticks from the south of Brazil. Virus Evol. 2018 Apr; 4(Suppl 1): vey010.057. Published online 2018 Apr 17. doi: 10.1093/ve/vey010.057. PMCID: PMC5905370.

5: Williams SH, Che X, Garcia JA, Klena JD, Lee B, Muller D, Ulrich W, Corrigan RM, Nichol S, Jain K, Lipkin WI. Viral Diversity of House Mice in New York City. MBio. 2018 Apr 17;9(2). pii: e01354-17. doi: 10.1128/mBio.01354-17. PubMed PMID: 29666290.

6: Gleeson MD, Moore BA, Edwards SG, Stevens S, Childress AL, Wellehan JFX Jr, Robertson J, Murphy CJ, Hawkins MG, Paul-Murphy J. A novel herpesvirus associated with chronic superficial keratitis and proliferative conjunctivitis in a great horned owl (Bubo virginianus). Vet Ophthalmol. 2018 Apr 14. doi: 10.1111/vop.12570. [Epub ahead of print] PubMed PMID: 29656541.

7: de Souza WM, Romeiro MF, Sabino-Santos G Jr, Maia FGM, Fumagalli MJ, Modha S, Nunes MRT, Murcia PR, Figueiredo LTM. Novel orthohepeviruses in wild rodents from São Paulo State, Brazil. Virology. 2018 Apr 5;519:12-16. doi: 10.1016/j.virol.2018.03.025. [Epub ahead of print] PubMed PMID: 29627586.

8: Lu G, Jia K, Ping X, Huang J, Luo A,Wu P, Li S. Novel bovine hepacivirus in dairy cattle, China. Emerging Microbes & Infections. 2018 Apr;7:54. Ebub 2018 Apr 04. doi: 10.1038/s41426-018-0055-8.  

9: Zhou P, Fan H, Lan T, Yang XL, Shi WF, Zhang W, Zhu Y, Zhang YW, Xie QM, Mani S, Zheng XS, Li B, Li JM, Guo H, Pei GQ, An XP, Chen JW, Zhou L, Mai KJ, Wu ZX, Li D, Anderson DE, Zhang LB, Li SY, Mi ZQ, He TT, Cong F, Guo PJ, Huang R, Luo Y, Liu XL, Chen J, Huang Y, Sun Q, Zhang XLL, Wang YY, Xing, SZ, Chen YS, Sun Y, Li J, Daszak P, Wang LF, Shi ZL, Tong YG, Ma JY. Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin. Nature. 2018 Apr. doi: 10.1038/s41586-018-0010-9. Epub 2018 April 04.  

10: Yinda CK, Ghogomu SM, Conceição-Neto N, Beller L, Deboutte W, Vanhulle E, Maes P, Van Ranst M, Matthijnssens J. Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code. Virus Evolution. 2018 Jan 1; 4(1). doi: 10.1093/ve/vey008. Epub 2018 Mar 30.

11: Ryll R, Eiden M, Heuser E, Weinhardt M, Ziege M, Höper D, Groschup MH, Heckel G, Johne R, Ulrich RG. Hepatitis E virus in feral rabbits along a rural-urban transect in Central Germany. Infect Genet Evol. 2018 Mar 26. pii: S1567-1348(18)30119-9. doi: 10.1016/j.meegid.2018.03.019. [Epub ahead of print] PubMed PMID: 29597055.

12: Geldenhuys M, Mortlock M, Weyer J, Bezuidt O, Seamark ECJ, Kearney T, Gleasner C, Erkkila TH, Cui H, Markotter W. A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa. PLoS One. 2018 Mar 26;13(3):e0194527. doi: 10.1371/journal.pone.0194527. eCollection 2018. PubMed PMID: 29579103.

13: Amery-Gale J, Hartley CA, Vaz PK, Marenda MS, Owens J, Eden PA, Devlin JM. Avian viral surveillance in Victoria, Australia, and detection of two novel avian herpesviruses. PLoS One. 2018 Mar 23;13(3):e0194457. doi: 10.1371/journal.pone.0194457. eCollection 2018. PubMed PMID: 29570719.

14: de Souza WM, Dennis T, Fumagalli MJ, Araujo J, Sabino-Santos G, Maia FGM, Acrani GO, Carrasco AOT, Romeiro MF, Modha S, Vieira LC, Ometto T, Queiroz LH, Durigon EL, Nunes MRT, Figueiredo LTM, Gifford RJ. Novel Parvoviruses from Wild and Domestic Animals in Brazil Provide New Insights into Parvovirus Distribution and Diversity. Viruses. 2018 Mar 22;10(4). pii: E143. doi: 10.3390/v10040143. PubMed PMID: 29565808.

15: Luo XL, Lu S, Jin D, Yang J, Wu SS, Xu J. Marmota himalayana in the Qinghai-Tibetan plateau as a special host for bi-segmented and unsegmented picobirnaviruses. Emerg Microbes Infect. 2018 Mar 7;7(1):20. doi: 10.1038/s41426-018-0020-6. PubMed PMID: 29511159; PubMed Central PMCID: PMC5841229.

16: Xia H, Wang Y, Shi C, Atoni E, Zhao L, Yuan Z. Comparative Metagenomic Profiling of Viromes Associated with Four Common Mosquito Species in China. Virol Sin. 2018 Feb;33(1):59-66. doi: 10.1007/s12250-018-0015-4. Epub 2018 Mar 2. PubMed PMID: 29500689.

17: Luo Y, Li B, Jiang RD, Hu BJ, Luo DS, Zhu GJ, Hu B, Liu HZ, Zhang YZ, Yang XL, Shi ZL. Longitudinal Surveillance of Betacoronaviruses in Fruit Bats in Yunnan Province, China During 2009-2016. Virol Sin. 2018 Feb;33(1):87-95. doi: 10.1007/s12250-018-0017-2. Epub 2018 Mar 2. PubMed PMID: 29500692.

18: Wang B, Li W, Zhou JH, Li B, Zhang W, Yang WH, Pan H, Wang LX, Bock CT, Shi ZL, Zhang YZ, Yang XL. Chevrier's Field Mouse (Apodemus chevrieri) and Père David's Vole (Eothenomys melanogaster) in China Carry Orthohepeviruses that form Two Putative Novel Genotypes Within the Species Orthohepevirus C. Virol Sin. 2018 Feb;33(1):44-58. doi: 10.1007/s12250-018-0011-8. Epub 2018 Mar 2. PubMed PMID: 29500690.

19: Van Nguyen D, Van Nguyen C, Bonsall D, Ngo TT, Carrique-Mas J, Pham AH, Bryant JE, Thwaites G, Baker S, Woolhouse M, Simmonds P. Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam. Viruses. 2018 Feb 28;10(3). pii: E102. doi: 10.3390/v10030102. PubMed PMID: 29495551.

20: Duraisamy R, Akiana J, Davoust B, Mediannikov O, Michelle C, Robert C, Parra HJ, Raoult D, Biagini P, Desnues C. Detection of novel RNA viruses from free-living gorillas, Republic of the Congo: genetic diversity of picobirnaviruses. Virus Genes. 2018 Feb 23. doi: 10.1007/s11262-018-1543-6. [Epub ahead of print] PubMed PMID: 29476397.

21: Binn LN, Norby EA, Marchwicki RH, Jarman RG, Keiser PB, Hang J. Canine caliciviruses of four serotypes from military and research dogs recovered in 1963-1978 belong to two phylogenetic clades in the Vesivirus genus. Virol J. 2018 Feb 23;15(1):39. doi: 10.1186/s12985-018-0944-4. PubMed PMID: 29471848; PubMed Central PMCID: PMC5824495.

22: Hyndman TH, Shilton CM, Stenglein MD, Wellehan JFX Jr. Divergent bornaviruses from Australian carpet pythons with neurological disease date the origin of extant Bornaviridae prior to the end-Cretaceous extinction. PLoS Pathog. 2018 Feb 20;14(2):e1006881. doi: 10.1371/journal.ppat.1006881. eCollection 2018 Feb. PubMed PMID: 29462190; PubMed Central PMCID: PMC5834213.

23: Wacharapluesadee S, Duengkae P, Chaiyes A, Kaewpom T, Rodpan A, Yingsakmongkon S, Petcharat S, Phengsakul P, Maneeorn P, Hemachudha T. Longitudinal study of age-specific pattern of coronavirus infection in Lyle's flying fox (Pteropus lylei) in Thailand. Virol J. 2018 Feb 20;15(1):38. doi: 10.1186/s12985-018-0950-6. PubMed PMID: 29463282; PubMed Central PMCID: PMC5819653.

24: Lelli D, Prosperi A, Moreno A, Chiapponi C, Gibellini AM, De Benedictis P, Leopardi S, Sozzi E, Lavazza A. Isolation of a novel Rhabdovirus from an insectivorous bat (Pipistrellus kuhlii) in Italy. Virol J. 2018 Feb 17;15(1):37. doi: 10.1186/s12985-018-0949-z. PubMed PMID: 29454370; PubMed Central PMCID: PMC5816388.

25: Hashimoto S, Gonzalez G, Harada S, Oosako H, Hanaoka N, Hinokuma R, Fujimoto T. Recombinant type Human mastadenovirus D85 associated with epidemic keratoconjunctivitis since 2015 in Japan. J Med Virol. 2018 May;90(5):881-889. doi: 10.1002/jmv.25041. Epub 2018 Feb 15. PubMed PMID: 29396992.

26: De Sabato L, Lemey P, Vrancken B, Bonfanti L, Ceglie L, Vaccari G, Di Bartolo I. Proposal for a new subtype of the zoonotic genotype 3 Hepatitis E virus: HEV-3l. Virus Res. 2018 Mar 15;248:1-4. doi: 10.1016/j.virusres.2018.02.010. Epub 2018 Feb 13. PubMed PMID: 29452164.

27: Lu L, Van Dung N, Ivens A, Bogaardt C, O'Toole A, Bryant JE, Carrique-Mas J, Van Cuong N, Anh PH, Rabaa MA, Tue NT, Thwaites GE, Baker S, Simmonds P, Woolhouse ME; VIZIONS Consortium. Genetic diversity and cross-species transmission of kobuviruses in Vietnam. Virus Evol. 2018 Feb 13;4(1):vey002. doi: 10.1093/ve/vey002. eCollection 2018 Jan. PubMed PMID: 29449965; PubMed Central PMCID: PMC5810437.

28: Wang X, Li W, Xu X, Wang W, He K, Fan H. Phylogenetic analysis of two goat-origin PCV2 isolates in China. Gene. 2018 Apr 20;651:57-61. doi: 10.1016/j.gene.2018.01.095. Epub 2018 Feb 2. PubMed PMID: 29408624.

29: Divers TJ, Tennant BC, Kumar A, McDonough S, Cullen J, Bhuva N, Jain K, Chauhan LS, Scheel TKH, Lipkin WI, Laverack M, Trivedi S, Srinivasa S, Beard L, Rice CM, Burbelo PD, Renshaw RW, Dubovi E, Kapoor A. New Parvovirus Associated with Serum Hepatitis in Horses after Inoculation of Common Biological Product. Emerg Infect Dis. 2018 Feb;24(2):303-310. doi: 10.3201/eid2402.171031. PubMed PMID: 29350162; PubMed Central PMCID: PMC5782890.

30: Piewbang C, Jo WK, Puff C, Ludlow M, van der Vries E, Banlunara W, Rungsipipat A, Kruppa J, Jung K, Techangamsuwan S, Baumgärtner W, Osterhaus ADME. Canine Bocavirus Type 2 Infection Associated With Intestinal Lesions. Vet Pathol. 2018 Jan 1:300985818755253. doi: 10.1177/0300985818755253. [Epub ahead of print] PubMed PMID: 29421972.

31: Laenen L, Vergote V, Kafetzopoulou LE, Wawina TB, Vassou D, Cook JA, Hugot JP, Deboutte W, Kang HJ, Witkowski PT, Köppen-Rung P, Krüger DH, Licková M, Stang A, Striešková L, Szemeš T, Markowski J, Hejduk J, Kafetzopoulos D, Van Ranst M, Yanagihara R, Klempa B, Maes P. A Novel Hantavirus of the European Mole, Bruges Virus, Is Involved in Frequent Nova Virus Coinfections. Genome Biol Evol. 2018 Jan 1;10(1):45-55. doi: 10.1093/gbe/evx268. PubMed PMID: 29272370; PubMed Central PMCID: PMC5758900.

 

Let it grow!

The launch of this literature collection on zoonotic virus discovery starts with all articles found in reverse chronological order since the beginning of the year 2018. It will be continued by compiling more and more research findings from the recent past.  

While this list is intended to give you a comprehensive overview of the field, it can by no means make a claim to be complete. So you are cordially invited to comment on papers which you think should be added.